Resources: Publications

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  1. Prelude Peptide Synthesizer Cleaning Instructions

    22 Jan 2009 | Contributor(s): Aaron Masavage

    This document contains a lab Parker Lab specific preventative maintenance procedure for:1. Cleaning after each Synthesis2. Monthly Cleaning

  2. Case-control genome-wide association study of rheumatoid arthritis from Genetic Analysis Workshop 16 using penalized orthogonal-components regression-linear discriminant analysis

    03 Mar 2010 | Contributor(s): Dabao Zhang, Min Zhang

    Currently, genome-wide association studies (GWAS) are conducted by collecting a massive number of SNPs (i.e., large p) for a relatively small number of individuals (i.e., small n) and associations are made between clinical phenotypes and genetic variation one single-nucleotide polymorphism (SNP)...

  3. The Camp Calcium Database

    23 Jun 2012 | Publications | Contributor(s): Corrie Marie Whisner, Sumudinie Fernando, Sudheera Ruwanthaka Fernando, Berdine Martin, Ann Christine Catlin, david michael grobe

    Camp Calcium is a unique research study that investigates factors that improve building bone during the rapid growth period of adolescence and dietary factors which influence calcium and bone metabolism. While at camp, campers eat a controlled diet with a known amount of calcium and other...

  4. Simultaneous genome-wide association studies of anti-cyclic citrullinated peptide in rheumatoid arthritis using penalized orthogonal-components regression

    03 Mar 2010 | Publications | Contributor(s): Min Zhang, Dabao Zhang

    Genome-wide associations between single-nucleotide polymorphisms and clinical traits were simultaneously conducted using penalized orthogonal-components regression. This method was developed to identify the genetic variants controlling phenotypes from a massive number of candidate variants. By...

  5. Penalized orthogonal-components regression for large p small n data

    03 Mar 2010 | Publications | Contributor(s): Min Zhang, Dabao Zhang

    Here we propose a penalized orthogonal-components regression (POCRE) for large p small n data. Orthogonal components are sequentially constructed to maximize, upon standardization, their correlation to the re-sponse residuals. A new penalization framework, implemented via empirical Bayes...

  6. ITMIG Workshops on Prognostic Factors and Definitions, Policies and Procedures

    14 Jan 2011 | Publications | Contributor(s): James Huang, Ann Christine Catlin

    ITMIG conducted 2 workshops that took place at the Yale Cancer Center West Campus on November 15 and 16. The first workshop focused on a review of current data on prognostic factors, and potential new factors, while the second tackled areas of ambiguity, so that moving forward ITMIG would have a...

  7. Behavior Lifestyle Questionnaire

    09 Apr 2011 | Publications | Contributor(s): kathleen abrahamson, Meghan Heather McDonough, Ann Christine Catlin

    This questionnaire created by Kathleen Abrahamson and Meghan McDonough is used to collect physical activity, stress, social support, organizational and quality of life information for consented patients in the Colorectal Cancer Pilot Study.Kathleen Abrahamson, Department of Public Health ,...

  8. Business Associate Agreements for the ITMIG Databases

    03 Nov 2011 | Publications | Contributor(s): Ann Christine Catlin, James Huang, Frank Detterbeck, Sudheera Ruwanthaka Fernando, Sumudinie Fernando, Nasly Yoosuf, Ruchith, Ruwan Janapriya Egoda Gamage, Administrator ITMIG, Summer Guo, Xiaojie(Summer) Guo

    The collection of BAAs for the ITMIG Databases will be stored here:Louis Pradel Hospital, Lyon, France Nicolas Girard 11.02.2011Yale Cancer Center, New Haven, CT, USA Frank Detterbeck 11.07.2011Memorial Sloan Kettering Cancer Center, New York, New York, USA Jim Huang 07.19.2012M. D. Anderson...

  9. The 8th Annual Cancer Care Engineering Retreat

    09 May 2013 | Publications | Contributor(s): Marietta L. Harrison, Patrick J. Loehrer Sr., MD, Joseph F Pekny, Luanne Mi, Ann Christine Catlin

    The 8th Annual Cancer Care Engineering Retreat was held Tuesday, April 30, 2013 at IUPUI Campus Center Room 268, 420 University Blvd, Indianapolis from 8:30am to 2:00pm. The Retreat Agenda covered the biological, clinical, laboratory, modeling and informatics perspectives of the Cancer Care...

  10. A Medicinal Chemist's Guide to Molecular Interactions

    03 Aug 2013 | Publications | Contributor(s): Markus Lill