OMIC Data Formats: Notes for the Modeling Research Group

20 Feb 2009 | Notes | Contributor(s): Ann Christine Catlin

Each OMIC analysis laboratory has one or more analysis workflows that begin with instrument-generated datasets, where the format of the instrument dataset made available to modeling researchers for …

http://ccehub.org/resources/222

Global Proteomics Sample Preparation Protocol

13 Feb 2009 | Notes | Contributor(s): Catherine Riley

The urea-based trypsin digestion sample preparation protocol is used for the plasma samples acquired through the Cancer Care Engineering Colorectal Cancer OMIC Study. Prepared samples are analyzed …

http://ccehub.org/resources/207

LECO GC-TOF Instrument Setup: Metabolomics for Cancer Care Engineering

13 Feb 2009 | Notes | Contributor(s): Daniel Raftery

This document describes the setup for the LECO GC-TOF mass spectrometry instrument in preparation for metabolomics GCxGC-MS analysis of serum samples processed from patient whole blood at the IUSCC …

http://ccehub.org/resources/205

Sample Preparation : Metabolomics Analysis for Cancer Care Engineering

13 Feb 2009 | Notes | Contributor(s): Daniel Raftery, Ann Christine Catlin

This document describes the preparation of serum samples in the Raftery Laboratory for metabolomics GCxCG-MS analysis using the LECO GC-TOF mass spectrometer.Serum samples are processed from patient …

http://ccehub.org/resources/203

Sample Preparation Protocol: Lipidomics for Cancer Care Engineering

14 Oct 2008 | Notes | Contributor(s): Zhenwen Zhao

This document describes the preparation of the plasma sample for lipidomics analysis using the API-4000 mass spectrometer. The plasma was processed from the patient whole blood at the IUSCC clinic …

http://ccehub.org/resources/118

API-4000 Instrument Setup : Lipidomics for Cancer Care Engineering

14 Oct 2008 | Notes | Contributor(s): Zhenwen Zhao

This document describes the setup for the API-4000 mass spectrometry instrument in preparation for lipidomics analysis of the plasma processed from the patient whole blood.

http://ccehub.org/resources/117