Online Simulation

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  1. biomarker discovery
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  4. colorectal cancer
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  7. lipidomics
  8. mass spectrometry
  9. metabolomics
  10. OMIC analysis
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  12. population-based models
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  14. proteomics
  15. sample acquisition
  16. screening
  17. statistical models
  18. visual analytics

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Resources: Tools

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Top Rated

The following are top-rated resources of this type.

  1. Colorectal Cancer Incidence Prediction Model

    16 Jun. 2008 | Tools | Contributor(s): Eric Sherer, Mohd Rahmad

    Stochastic simulation of polyp and colorectal cancer (CRC) incidence with patient age.

  2. GCxGC-MS Data Classification and Alignment

    02 Dec. 2008 | Tools | Contributor(s): Dabao Zhang, Min Zhang, Jason Catlin

    Align and classify GCxGC-MS data

  3. Monte Carlo Simulation for four CRC Incidence Models

    12 Dec. 2008 | Tools | Contributor(s): Eric Sherer

    A Monte Carlo Simulator determines the risk of colorectal cancer (CRC) development in a population by calculating multiple, individual patient trajectories.

  4. Workspace

    27 Apr. 2009 | Tools | Contributor(s): Nicholas Kisseberth

    Workspace

  5. Spectrum Deconvolution of LC-MS Data

    03 Dec. 2008 | Tools | Contributor(s): Ann Christine Catlin, George Howlett

    Spectral deconvolution differentiates analyte signals from contaminants or instrumental noise, and reduces data dimensionality to benefit downstream statistical analysis.

  6. Peak Alignment of LC-MS Data

    24 Jun. 2009 | Tools | Contributor(s): Ann Christine Catlin, George Howlett

    Peak alignment addresses retention time shift by recongnizing and aligning significant peaks; it then uses discrete deconvolutio to align overlapped peaks.

  7. OMIC Explorer

    16 Mar. 2009 | Tools | Contributor(s): Philip Livengood

    Visual exploration of GCxGC MS Data

  8. Normalization of Aligned LC-MS Data

    18 Jun. 2009 | Tools | Contributor(s): Ann Christine Catlin, George Howlett

    Normalization attempts to quantitatively filter overall peak intensity variations due to experiment errors such as systematic variable injection volumes loaded onto LC-MS.

  9. Significance Testing of Normalized LC-MS Data

    23 Jun. 2009 | Tools | Contributor(s): Ann Christine Catlin

    Several statistical significance tests are employed to identify peptide or metabolite peaks that either make significant contributions to the molecular profile of a sample or distinguish a group of samples from others.

  10. Pattern Recognition for Normalized LC-MS Data

    01 Jul. 2009 | Tools | Contributor(s): Ann Christine Catlin, George Howlett

    This tool provides principal component analysis (PCA), linear discriminate analysis (LDA), and canonical discriminate analysis (CDA) for data clustering on aligned, normalized LC-MS datasets.