Mesothelioma Doctors

21 Nov 2011 | Notes | Contributor(s): Robert Warner

Because mesothelioma is so rare, representing about 0.3 percent of all diagnosed cancers annually, and has no known cure, people who have the disease are urged to find a specialist to treat it. Doctors trained in asbestos-related diseases typically provide the highest quality of care for …

Business Associate Agreement for the ITMIG Databases

03 Nov 2011 | Publications | Contributor(s): Ann Christine Catlin, Sudheera Ruwanthaka Fernando, Sumudinie Fernando, Nasly Yoosuf, Ruchith, Ruwan Janapriya Egoda Gamage, Administrator ITMIG

The collection of BAAs for the ITMIG Databases will be stored here.

An ITMIG Education Module: Searchable Annotated Imaging Library

24 Jun 2011 | Teaching Materials | Contributor(s): edith michelle marom, Daniel R Gomez, Ruwan Janapriya Egoda Gamage, Ann Christine Catlin

This ITMIG Educational Module presents a searchable, annotated library of images for normal and cancer patients, including thymoma tumors stages I to IV. Images can be searched and viewed in modes such as Stage order with an explanatory legend, Stage order without an explanatory …

6th Annual Cancer Care Engineering Retreat

15 Jun 2011 | Series

The 6th Annual Cancer Care Engineering Retreat was held Friday, May 27, 2011 at the University Place Conference Center IUPUI Campus from 8:30am to 4:00pm. The Retreat Agenda covered the clinical, laboratory, modeling and informatics perspectives of the Cancer Care Engineering and follow-on …

Hamilton Molecular Characterization Laboratory

26 May 2011 | Teaching Materials | Contributor(s): Stanley R Hamilton, Ann Christine Catlin

Characterization of the molecular pathology of CRC will be included in this project that addresses CRC in Indiana in order to bridge the conventional histologic examination with the evolving molecular signature profiles in CRC and the OMIC analysis. Characterization of the molecular pathology of …

Behavior Lifestyle Questionnaire

09 Apr 2011 | Publications | Contributor(s): kathleen abrahamson, Meghan Heather McDonough

This questionnaire created by Kathleen Abrahamson and Meghan McDonough is used to collect physical activity, stress, social support, organizational and quality of life information for consented patients in the Colorectal Cancer Pilot Study. Kathleen Abrahamson, Department of Public Health , …

Maldi Peak Quantifier

19 Feb 2011 | Tools | Contributor(s): Laurie Parker, Guoheng Chen

An adaptation of a tool written for Parker et al, Journal of Mass Spectrometry, 2008 to perform relative quantitation of peaks in MALDI-TOF spectra

Visualization for Collections of Data from Spectrum Deconvolution

02 Feb 2011 | Tools | Contributor(s): Guoheng Chen, Ann Christine Catlin

This plotting tool allows users to visualize the output of batch processed spectrum deconvolution LC-MS data from the proteome discovery pipeline.

Batch Processing for the Spectrum Deconvolution of LC-MS Data

18 Jan 2011 | Tools | Contributor(s): Guoheng Chen, Ann Christine Catlin

Batch version of the spectral deconvolution tool which differentiates analyte signals from contaminants or instrumental noise.

ITMIG Workshops on Prognostic Factors and Definitions, Policies and Procedures

14 Jan 2011 | Publications | Contributor(s): James Huang, Ann Christine Catlin

ITMIG conducted 2 workshops that took place at the Yale Cancer Center West Campus on November 15 and 16. The first workshop focused on a review of current data on prognostic factors, and potential new factors, while the second tackled areas of ambiguity, so that moving forward ITMIG would have a …

POCRE

04 Jan 2011 | Tools | Contributor(s): Min Zhang, Dabao Zhang, Yanzhu Lin, Guoheng Chen

POCRE is a penalized orthogonal-components regression for large p (number of SNPs) and small n (number of individuals).

Database Technology at the HUB

04 Jan 2011 | Notes | Contributor(s): Ann Christine Catlin, Nabeel Yoosuf, Sudheera Ruwanthaka Fernando, Sumudinie Fernando, Ruchith, Sahan Gamage, Puneet Gupta, Guoheng Chen, Preeti Rao

This resource contains documentation about the design, development and operation of the database technology developed for the hub cyberinfrastructure. It is restricted to the R&D group developing the hub technologies on cceHUB, pharmaHUB, thermalHUB, NEEShub, catalyzecare HUB and …

Tzu Yi Example Page for Laboratory Group Wikis

08 Dec 2010 | Online Presentations | Contributor(s): Laurie Parker

Sample page for individual group members' pages. Tzu-Yi Yang

Group Wiki Template for Laboratory Groups

08 Dec 2010 | Online Presentations | Contributor(s): Laurie Parker

Powerpoint with text template for wiki formatting to make a main group wiki page.

cceHUB Lab Wiki Workshop 2

08 Dec 2010 | Online Presentations | Contributor(s): Tzu-Yi Yang, Laurie Parker

This presentation gives an overview of how to set up pages to be like an online lab notebook in the cceHUB's wiki environment. Tzu-Yi Yang

cceHUB Lab Wiki Workshop 1

08 Dec 2010 | Online Presentations | Contributor(s): Laurie Parker

This powerpoint presentation gives an overview of components you can use to design and put together a lab wiki environment for your group on the cceHUB. A related presentation (cceHUB Lab Wiki Workshop 2) shows in detail how to use the wiki format for "online lab notebook" type pages. Laurie Parker

Certificates of Analysis for CCE Vitamin D

23 Nov 2010 | Notes | Contributor(s): Bo Xie

Certificate CCE-1: Sample origin: Human serum Date of sample receipt: 10/7/2010 Receipt condition: Frozen -80C Sample Designations: 74 samples in SE04 set Storage at Intelimmune: Frozen -80C Assay Method: LC/MS-MRM Assay Date: 10/11 - 10/13/10 Sample volume: 250 uL Results Key: Limit …

Aubice: Interactive Correlation Tester

17 Nov 2010 | Teaching Materials | Contributor(s): Ann Christine Catlin

Use Aubice to see a graphical view of patient data correlation based on data collected for consented patients in the Cancer Care Engineering colorectal cancer pilot study. In Aubice, choose attributes to filter and/or color the display to see specific patient behaviors.Download the power point …

The MaCH SNP Data VisualizationTool

17 Oct 2010 | Tools | Contributor(s): Guoheng Chen, Yanzhu Lin, Ann Christine Catlin

This plotting tool allows users to visualize the MaCH output data for a selected SNP across all subjects.