|
Status of OMIC Data Sharing for the CCE Laboratories, February 2011 |
 |
 |
 |
What lab data is available at cceHUB for shared analysis?
For a complete breakdown of data contributed by the CCE Laboratoires, see CCE Project Data Summary compiled by Yanzhu Lin
| OMIC Type |
Instrument
Laboratory |
# Instrument Files
Uploaded |
# Samples
Processed |
% Total Samples
[1] |
Data Last
Upload On |
Analysis Method |
Analysis Data
Laboratory |
# Analysis Files
Uploaded |
Any Analysis
for Sharing ? [2] |
| Vitamin D |
Intelimmune
AB-4000 QTRAP |
4 Excel
Spreadsheets |
225 |
85% |
11/22/2010 |
Signaling Analysis |
Teegarden |
0 |
no |
| Global Proteomics |
Bindley Biosciences
XCT PLUS Ion Trap |
193 mzXML
Data Files |
188 |
71% |
10/02/2010 |
Discovery Pipeline |
Min Zhang |
0 |
no |
| Lipidomics |
Yan Xu
AB-4000 QTRAP |
1 Excel
Spreadsheet |
143 |
54% |
09/22/2010 |
LPA, LPC, SPC
Analysis |
Yan Xu |
0 |
no |
| Total Anti-Oxidant Capacity |
Jim Klaunig
Tecan Microplate Reader |
1 Excel
Spreadsheet |
259 |
98% |
03/18/2011 |
TEAC Assay |
Jim Klaunig |
0 |
no |
| Oxidative DNA damage |
Jim Klaunig
Nikon Microscope |
1 Excel
Spreadsheet |
101 |
38% |
02/12/2010 |
Comet Assay |
Jim Klaunig |
0 |
no |
| Genotyping Analysis |
Jim Klaunig
AB-7900 HT |
0 |
0 |
0 |
00/00/0000 |
allelic discrimination |
Jim Klaunig |
0 |
no |
| NMR Metabolomics |
Dan Raftery
Bruker Spectrometer |
2 Excel
Spreadsheets |
110 |
41% |
05/25/2010 |
PCA |
Dan Raftery |
0 |
no |
| GCGC-MS Metabolomics |
Dan Raftery
LECO Pegasus 4D TOF |
230 cdf & csv
Data Files |
230 |
87% |
03/04/2011 |
PCA |
Dan Raftery |
0 |
no |
| Glycoproteomics |
Fred Regnier
XCT PLUS Ion Trap |
0 |
0 |
0 |
00/00/0000 |
Protein
Fingerprinting |
Fred Regnier |
0 |
no |
Let's talk about how cceHUB can help!
[1] Instrument data from the labs:
- Are there instrument data files at the labs that are not yet uploaded? Do labs need more upload support?
- Is the sample distribution system working well for the laboratories? Are any changes in the Sample Tracking Process necessary?
[2] Analysis data from the labs:
- Is there analysis result data at the labs that has not yet been contributed?
- Is the clinical patient data available for easy browsing and searching? Are any changes in the Clinical Data Viewer necessary?
- How do labs want to contribute analysis results? As presentations? As tables of data -- spreadsheet style? Should there be a standard?
- Should analysis results be contributed as cceHUB resources? as "lab group" wiki files? Or should we design a better way to upload and display analysis results?
- How can cceHUB better support collaboration about analysis results??
|